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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79706651_79707914_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79706651 - 79707914
Intron Length:
1264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTCC
5'SS Class:
major
3'SS Sequence:
CATTCTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
CATTCTTCCACA
Flanking Amino Acid:
SHNCEYDSVKILSGGHVEGV
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
60.5
39.3
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
78.1
0.63
0.8
72.3
32
Minor 5ss
37
-1.5
3.4
51.5
45.2
Minor BPS
49.8
-0
2
64.37
42.3

Associated Gene:

Gene:
C1S
Ensembl Gene ID:
ENSAPLG00000005501
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005757
79705151 - 79715100
9950