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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79709855_79710109_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79709855 - 79710109
Intron Length:
255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TGTCTTTTCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATCAC
U12 Branch Point Sequence:
GTCTTTTCAAAG
Flanking Amino Acid:
KGWKIRYYADPITCPPSVIS
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.3
72
34.7
Major BPS
52.8
0.07
1.2
57.7
39
Major PPT
72.7
0.51
1
74
34.5
Minor 5ss
31.1
-2.2
2.6
33.8
35.7
Minor BPS
48.5
-0.2
1.7
52.94
42

Associated Gene:

Gene:
C1S
Ensembl Gene ID:
ENSAPLG00000005501
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005757
79705151 - 79715100
9950