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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79710226_79710454_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79710226 - 79710454
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AGTTACTTACAT
Flanking Amino Acid:
TCVEGYEIVVKQDSIRTFYS
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.2
28.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.5
0.73
0.7
77.1
31.6
Minor 5ss
40.6
-1
2.8
49.4
41.4
Minor BPS
53.6
0.19
1.9
73.9
42.1

Associated Gene:

Gene:
C1S
Ensembl Gene ID:
ENSAPLG00000005501
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005757
79705151 - 79715100
9950