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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79710886_79711391_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79710886 - 79711391
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTGTAT
U12 Branch Point Sequence:
TCTTCTTGCACT
Flanking Amino Acid:
PYYTLKNEGEVVYECSASGQ
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
53.8
0.09
1.6
57.4
49.1
Major PPT
69
0.43
1.1
67.5
42.8
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
59.6
0.38
1.9
80.32
41.9

Associated Gene:

Gene:
C1S
Ensembl Gene ID:
ENSAPLG00000005501
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005757
79705151 - 79715100
9950