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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79711467_79713303_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79711467 - 79713303
Intron Length:
1837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTACCA
5'SS Class:
major
3'SS Sequence:
CTTTTCCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCCTTTTCC
Flanking Amino Acid:
MGTELPKCVAVCGVPSNPVR
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
58.3
40.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
84.9
0.78
0.7
77.7
31.1
Minor 5ss
31.2
-2.1
3.2
40.9
44.8
Minor BPS
49.2
-0
3.6
82.88
37.2

Associated Gene:

Gene:
C1S
Ensembl Gene ID:
ENSAPLG00000005501
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005757
79705151 - 79715100
9950