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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79718596_79718829_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79718596 - 79718829
Intron Length:
234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
ATGTCATGATCT
Flanking Amino Acid:
GQGRIPACLPVCGKPNRPVA
Intron Amino Acid Position:
561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
85.7
0.8
0.7
80
25.5
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
49.7
0.06
2
72.85
43.5

Associated Gene:

Gene:
C1R
Ensembl Gene ID:
ENSAPLG00000006077
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006378
79717793 - 79725034
7242