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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79718905_79720492_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79718905 - 79720492
Intron Length:
1588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCATCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
TCTCATTCAATC
Flanking Amino Acid:
YYHIVTRGGGGRFTCSPEGT
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
79.7
0.67
0.8
72.8
31.8
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
49.3
-0
1.7
60.85
38.7

Associated Gene:

Gene:
C1R
Ensembl Gene ID:
ENSAPLG00000006077
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006378
79717793 - 79725034
7242