Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79721176_79721796_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

79721176 - 79721796

Intron Length:

621

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGACCC

5'SS Class:

strong_major

3'SS Sequence:

TTCTTCCATGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TGTTTTTTATTC

Flanking Amino Acid:

TCKTGYNLMKGSQKLLSFTA

Intron Amino Acid Position:

463

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

68.6

36.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

82.3

0.73

0.8

77.8

29.8

Minor 5ss

27.8

-2.5

2.9

34.2

41.4

Minor BPS

61.4

0.34

1.5

70.06

35.9

Associated Gene:

Gene:

C1R

Ensembl Gene ID:

ENSAPLG00000006077

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006378

79717793 - 79725034

7242