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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79722826_79722970_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79722826 - 79722970
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
CCCCCTACCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ACGTTGTTAATT
Flanking Amino Acid:
QLQSDRHSCKVECSSELYTE
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
66.7
0.38
0.8
57.5
31.8
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
53.5
0.19
2
69.02
42.9

Associated Gene:

Gene:
C1R
Ensembl Gene ID:
ENSAPLG00000006077
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006378
79717793 - 79725034
7242