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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79723929_79724681_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79723929 - 79724681
Intron Length:
753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
GCCATGTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
TATGTCATGATG
Flanking Amino Acid:
AVGTAEERMEMHSPFLLWAI
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.3
36.2
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
71.7
0.49
1
63.6
41.7
Minor 5ss
33.3
-1.9
3.4
44.7
43.5
Minor BPS
47.9
-0.3
1.7
55.42
40.3

Associated Gene:

Gene:
C1R
Ensembl Gene ID:
ENSAPLG00000006077
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006378
79717793 - 79725034
7242