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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79728220_79728768_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79728220 - 79728768
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTATTT
Flanking Amino Acid:
LGPVDGRKCQTTVSWEGDQL
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
75
35.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.6
0.98
0.6
92.5
25.6
Minor 5ss
28.4
-2.5
2.8
34.6
41.3
Minor BPS
57.4
0.31
1.8
77.92
38.5

Associated Gene:

Gene:
RBP5
Ensembl Gene ID:
ENSAPLG00000007239
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007521
79727799 - 79729263
1465