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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79732250_79732737_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79732250 - 79732737
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTCTCTGCATC
Flanking Amino Acid:
PDGANTKKSHKATVHVRVND
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.7
40.1
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
74.7
0.56
0.9
74.2
35.2
Minor 5ss
35.3
-1.7
2.9
41.5
39
Minor BPS
49.8
-0
1.9
68.18
37.5

Associated Gene:

Gene:
CLSTN3
Ensembl Gene ID:
ENSAPLG00000007312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044390
79728960 - 79743282
14323
ENSAPLT00000023453
79730191 - 79743282
13092
ENSAPLT00000007632
79719917 - 79743282
23366