Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79734952_79735212_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

79734952 - 79735212

Intron Length:

261

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGACAC

5'SS Class:

major

3'SS Sequence:

TGTCCCCTGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTAAT

U12 Branch Point Sequence:

TTGTATGTAATG

Flanking Amino Acid:

ETVICSTVQSEDGYSHYSLA

Intron Amino Acid Position:

386

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

62.5

38.1

Major BPS

75.6

0.64

1.1

75.7

36.5

Major PPT

70.4

0.46

65.8

35.9

Minor 5ss

27.3

-2.6

34.5

41.3

Minor BPS

-0.2

2.2

59.52

43.1

Associated Gene:

Gene:

CLSTN3

Ensembl Gene ID:

ENSAPLG00000007312

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044390

79728960 - 79743282

14323

ENSAPLT00000023453

79730191 - 79743282

13092

ENSAPLT00000007632

79719917 - 79743282

23366