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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79735568_79736735_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79735568 - 79736735
Intron Length:
1168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
TCTCCTTTTACA
Flanking Amino Acid:
PSLMIGACWTEEKNKEKIKG
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
88.3
0.86
0.7
83
25.5
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
63.8
0.43
1.6
72.64
39.2

Associated Gene:

Gene:
CLSTN3
Ensembl Gene ID:
ENSAPLG00000007312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044390
79728960 - 79743282
14323
ENSAPLT00000023453
79730191 - 79743282
13092
ENSAPLT00000007632
79719917 - 79743282
23366