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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79738050_79738496_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79738050 - 79738496
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
GCCAGCTGATGC
Flanking Amino Acid:
VRPLRLTTAVKCFSEESCVS
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
26.8
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
87
0.83
0.6
85.1
22.4
Minor 5ss
28.3
-2.5
3.1
31.2
36.7
Minor BPS
35
-1.1
2
36.07
40.7

Associated Gene:

Gene:
CLSTN3
Ensembl Gene ID:
ENSAPLG00000007312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044390
79728960 - 79743282
14323
ENSAPLT00000023453
79730191 - 79743282
13092
ENSAPLT00000007632
79719917 - 79743282
23366