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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79738724_79739980_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79738724 - 79739980
Intron Length:
1257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCATCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTCTTTCCCT
Flanking Amino Acid:
AKKDENWHGTVTDTRMSDEI
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
77
0.61
0.9
73.8
35.4
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
47.8
-0
3.6
87.23
39

Associated Gene:

Gene:
CLSTN3
Ensembl Gene ID:
ENSAPLG00000007312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007632
79719917 - 79743282
23366
ENSAPLT00000044390
79728960 - 79743282
14323
ENSAPLT00000023453
79730191 - 79743282
13092