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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79740878_79741011_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79740878 - 79741011
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAAGAT
5'SS Class:
major
3'SS Sequence:
GATCTTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
ATCTCTCTCACT
Flanking Amino Acid:
RYSSNEFTVEMNVLHNMNRA
Intron Amino Acid Position:
781

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
68.6
36.4
Major BPS
79
0.72
1
69
38.9
Major PPT
79.6
0.67
0.9
73.5
36.7
Minor 5ss
30.4
-2.2
3.7
46.7
48.6
Minor BPS
51.3
0.12
2.1
74.59
42.5

Associated Gene:

Gene:
CLSTN3
Ensembl Gene ID:
ENSAPLG00000007312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044390
79728960 - 79743282
14323
ENSAPLT00000023453
79730191 - 79743282
13092
ENSAPLT00000007632
79719917 - 79743282
23366