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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79741148_79742746_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79741148 - 79742746
Intron Length:
1599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTATGTAAC
5'SS Class:
major
3'SS Sequence:
TCTTTCTCCAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GAGATGTTAACT
Flanking Amino Acid:
HSLASTHNNAMVPSAATIII
Intron Amino Acid Position:
826

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1
69.5
34.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
73.3
0.52
1
74.7
27.9
Minor 5ss
44
-0.7
2.5
55.4
37.1
Minor BPS
49.4
0.03
2.1
66.26
44.1

Associated Gene:

Gene:
CLSTN3
Ensembl Gene ID:
ENSAPLG00000007312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023453
79730191 - 79743282
13092
ENSAPLT00000007632
79719917 - 79743282
23366
ENSAPLT00000044390
79728960 - 79743282
14323