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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79745240_79745338_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79745240 - 79745338
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
AATCTGCTAATA
Flanking Amino Acid:
TCASCIAYPHEVIRTRLREE
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
85.8
0.81
0.8
77.8
36.7
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
44
-0.4
2.2
56.82
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007797
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008093
79743572 - 79752340
8769