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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79745623_79745829_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79745623 - 79745829
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GCTATTCTAACC
Flanking Amino Acid:
LVKTRMQLEARMKGELSSNA
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
78.3
0.64
0.9
73.2
37.1
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
49.7
-0
1.7
59.9
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007797
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008093
79743572 - 79752340
8769