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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79745897_79746510_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79745897 - 79746510
Intron Length:
614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TGGTGCTCACTG
Flanking Amino Acid:
KVHMLSAACAGITSSTLTNP
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
80.6
0.69
0.8
73.5
37.1
Minor 5ss
37
-1.5
3.2
50.1
46.5
Minor BPS
42.7
-0.6
2.2
47.85
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007797
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008093
79743572 - 79752340
8769