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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79746612_79746901_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79746612 - 79746901
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TTCTTTCCAACC
Flanking Amino Acid:
GPNLVGVAPSRAIYFAAYSG
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
84.8
32.5
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
73.6
0.53
0.9
67.6
38
Minor 5ss
38.9
-1.3
2.8
53.8
42.8
Minor BPS
49.9
-0
1.9
66.52
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007797
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008093
79743572 - 79752340
8769