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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79746980_79747408_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79746980 - 79747408
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTCTGCTGACTC
Flanking Amino Acid:
PPSPGVLKLLRTILEKEGMR
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
85.1
0.79
0.6
81.4
23.6
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
47.3
-0.2
2.1
62.53
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007797
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008093
79743572 - 79752340
8769