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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79747586_79751719_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79747586 - 79751719
Intron Length:
4134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCATCTTTACCT
Flanking Amino Acid:
HSTLLHLVAGGCGGTAGAIL
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
73.6
0.53
0.9
66.4
40.4
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
67.8
0.64
1.6
80.24
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007797
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008093
79743572 - 79752340
8769