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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79757514_79757681_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79757514 - 79757681
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTTGGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
GTGTTCATAATC
Flanking Amino Acid:
KPLGVASEDELVGEFLQEQN
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
71.1
0.48
1
69.1
37
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
59.6
0.28
1.6
67.55
38.2

Associated Gene:

Gene:
PEX5
Ensembl Gene ID:
ENSAPLG00000007988
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008339
79756984 - 79767662
10679
ENSAPLT00000038026
79756984 - 79767662
10679