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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79758475_79759628_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79758475 - 79759628
Intron Length:
1154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGGGC
5'SS Class:
major
3'SS Sequence:
GTGTTTTATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTCCTTGTACT
Flanking Amino Acid:
WSQEFIAEVTDPLSVSPAKW
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
60.7
38.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
78.3
0.64
1
73.7
40.9
Minor 5ss
23.5
-3.1
3.4
32
42.8
Minor BPS
59.8
0.39
1.8
82.6
38.2

Associated Gene:

Gene:
PEX5
Ensembl Gene ID:
ENSAPLG00000007988
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038026
79756984 - 79767662
10679
ENSAPLT00000028103
79756984 - 79767662
10679
ENSAPLT00000008339
79756984 - 79767662
10679