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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79761056_79761383_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79761056 - 79761383
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CCTTGTTTCATT
Flanking Amino Acid:
VDDPKLNSSEFLKFVRQIGD
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.6
37.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
77.3
0.61
0.8
72
32.7
Minor 5ss
28.5
-2.5
3.1
39.7
45.9
Minor BPS
47.7
-0.1
2.2
66.31
45.7

Associated Gene:

Gene:
PEX5
Ensembl Gene ID:
ENSAPLG00000007988
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028103
79756984 - 79767662
10679
ENSAPLT00000008339
79756984 - 79767662
10679