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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79761981_79762153_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79761981 - 79762153
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
GTCCTTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
TGTACTCTAGTC
Flanking Amino Acid:
EFEQAKTAVESDVDFWDKLQ
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
80.2
0.68
0.8
77.2
31.6
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
47.2
-0.2
1.9
60.66
38.7

Associated Gene:

Gene:
PEX5
Ensembl Gene ID:
ENSAPLG00000007988
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038026
79756984 - 79767662
10679
ENSAPLT00000028103
79756984 - 79767662
10679
ENSAPLT00000008339
79756984 - 79767662
10679