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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79762274_79762798_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79762274 - 79762798
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGAG
5'SS Class:
major
3'SS Sequence:
TCTTCCCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGGCAT
U12 Branch Point Sequence:
CTGGCATTAGCC
Flanking Amino Acid:
EDLSSSSYDKGYQFEEDNPM
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
66
40.1
Major BPS
49
-0
1.5
60.7
45.9
Major PPT
71.8
0.49
0.9
66.2
35.8
Minor 5ss
35.3
-1.7
3.4
46.6
48.7
Minor BPS
48
-0.1
2
59.14
45.8

Associated Gene:

Gene:
PEX5
Ensembl Gene ID:
ENSAPLG00000007988
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038026
79756984 - 79767662
10679
ENSAPLT00000028103
79756984 - 79767662
10679
ENSAPLT00000008339
79756984 - 79767662
10679