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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79762943_79765268_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79762943 - 79765268
Intron Length:
2326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGAAAT
U12 Branch Point Sequence:
TCTGTCTTAGTA
Flanking Amino Acid:
AVQQKPDHMEAWQYLGTTQA
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
50.6
0.02
1.1
57
36.4
Major PPT
82.3
0.73
0.8
74.1
36.6
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
56.7
0.21
1.7
66.1
41.4

Associated Gene:

Gene:
PEX5
Ensembl Gene ID:
ENSAPLG00000007988
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038026
79756984 - 79767662
10679
ENSAPLT00000028103
79756984 - 79767662
10679
ENSAPLT00000008339
79756984 - 79767662
10679