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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79765725_79765865_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79765725 - 79765865
Intron Length:
141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTTGG
5'SS Class:
major
3'SS Sequence:
CATGCTTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
CCGTGTACAAAT
Flanking Amino Acid:
SKRVLGSLLSDSLFVEVKEL
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
59.5
42.3
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
79.2
0.66
0.9
72.7
37.1
Minor 5ss
35.4
-1.7
2.8
36.7
41.6
Minor BPS
38.1
-0.8
2
49.59
44.1

Associated Gene:

Gene:
PEX5
Ensembl Gene ID:
ENSAPLG00000007988
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038026
79756984 - 79767662
10679
ENSAPLT00000028103
79756984 - 79767662
10679
ENSAPLT00000008339
79756984 - 79767662
10679