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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79766032_79766215_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79766032 - 79766215
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAAAG
5'SS Class:
major
3'SS Sequence:
TCCCCTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTGTCTCAGCC
Flanking Amino Acid:
FSAALSVRPNDHLLWNKLGA
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
73.7
36.9
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
80.5
0.69
0.7
72.4
32.3
Minor 5ss
35.2
-1.7
3
45.2
42.8
Minor BPS
53.1
0.08
1.9
70.1
41.5

Associated Gene:

Gene:
PEX5
Ensembl Gene ID:
ENSAPLG00000007988
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038026
79756984 - 79767662
10679
ENSAPLT00000028103
79756984 - 79767662
10679
ENSAPLT00000008339
79756984 - 79767662
10679