About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79881262_79884470_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79881262 - 79884470
Intron Length:
3209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTTCTTTACCC
Flanking Amino Acid:
LLPSEVPGKEVDLLDTSTAQ
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
76.8
0.82
1.5
85.93
32.4

Associated Gene:

Gene:
EPHA1
Ensembl Gene ID:
ENSAPLG00000002800
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002909
79880992 - 79914445
33454