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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79884539_79895366_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
79884539 - 79895366
Intron Length:
10828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
ACCTTGGGAGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTCTTCTACC
Flanking Amino Acid:
GWLPDPPEVGWSEVQQMING
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
33.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
55.6
0.13
1.1
50.4
42.2
Minor 5ss
30.1
-2.3
2.5
26.5
36
Minor BPS
63.1
0.4
1.9
79
36.5

Associated Gene:

Gene:
EPHA1
Ensembl Gene ID:
ENSAPLG00000002800
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002909
79880992 - 79914445
33454