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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79895643_79897260_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79895643 - 79897260
Intron Length:
1618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTAGG
5'SS Class:
major
3'SS Sequence:
CTCTTTCACTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TTCTCTTTCACT
Flanking Amino Acid:
IQFRRPLFIKLNTVAADRSF
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
65.3
46
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
73.7
0.53
0.8
73.6
30.3
Minor 5ss
36.6
-1.5
2.5
43
43.9
Minor BPS
71.7
0.77
1.7
87.23
39

Associated Gene:

Gene:
EPHA1
Ensembl Gene ID:
ENSAPLG00000002800
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002909
79880992 - 79914445
33454