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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79902804_79903000_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79902804 - 79903000
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
ATTCTTCTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTTTCTTTCATT
Flanking Amino Acid:
PLEGQNIACTRPPSAPRNVS
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.3
70.1
43.1
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
78.1
0.63
0.8
73.9
30.4
Minor 5ss
43.8
-0.7
2.9
62.9
41.9
Minor BPS
67.1
0.62
1.7
82.98
39.3

Associated Gene:

Gene:
EPHA1
Ensembl Gene ID:
ENSAPLG00000002800
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002909
79880992 - 79914445
33454