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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79903334_79904572_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79903334 - 79904572
Intron Length:
1239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCAGA
5'SS Class:
major
3'SS Sequence:
TTCTCCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTGTATTTCATT
Flanking Amino Acid:
PAVWVAVGHAAPVTVSHFIL
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.2
70.1
42
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.3
0.75
0.7
77.6
24.3
Minor 5ss
35.1
-1.7
2.7
41.2
44.7
Minor BPS
54.3
0.22
1.9
76.19
41.2

Associated Gene:

Gene:
EPHA1
Ensembl Gene ID:
ENSAPLG00000002800
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002909
79880992 - 79914445
33454