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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79904966_79907628_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79904966 - 79907628
Intron Length:
2663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTCTTTTAAAT
Flanking Amino Acid:
QEQEFRTLPPDTGALSGGVI
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.4
33.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
93
0.97
0.6
88.6
20.7
Minor 5ss
36.4
-1.5
3.4
49.2
47.3
Minor BPS
66.1
0.58
1.3
79.19
36.4

Associated Gene:

Gene:
EPHA1
Ensembl Gene ID:
ENSAPLG00000002800
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002909
79880992 - 79914445
33454