About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79907726_79909392_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79907726 - 79909392
Intron Length:
1667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTATGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTCTCCTTATGT
Flanking Amino Acid:
LLLGLLFFRRKHARRRQSRP
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
73.5
0.53
0.9
65.1
40.9
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
65.4
0.56
1.9
83.49
43.8

Associated Gene:

Gene:
EPHA1
Ensembl Gene ID:
ENSAPLG00000002800
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002909
79880992 - 79914445
33454