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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79909449_79909727_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79909449 - 79909727
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTACCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTGAC
U12 Branch Point Sequence:
TTTCCCTTTACC
Flanking Amino Acid:
PDYNTSGFDREKVWLKPYVD
Intron Amino Acid Position:
586

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
62.5
0.31
1.1
54.8
42.1
Major PPT
69.9
0.45
0.8
65
29.2
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
75.5
0.78
1.6
84.89
33.4

Associated Gene:

Gene:
EPHA1
Ensembl Gene ID:
ENSAPLG00000002800
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002909
79880992 - 79914445
33454