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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79909851_79909953_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79909851 - 79909953
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGGTTGTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
TCATCTGTGACC
Flanking Amino Acid:
CVTMENVIGEGEFGEVYRGS
Intron Amino Acid Position:
627

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.8
38.1
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
72.5
0.51
1
69.5
41.6
Minor 5ss
37.9
-1.4
2.9
40.9
45.3
Minor BPS
52.8
0.07
2
65.76
40.6

Associated Gene:

Gene:
EPHA1
Ensembl Gene ID:
ENSAPLG00000002800
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002909
79880992 - 79914445
33454