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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79912117_79912819_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79912117 - 79912819
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGAC
5'SS Class:
major
3'SS Sequence:
GTCATCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTTTCCTGATTT
Flanking Amino Acid:
KPYGDMTNQKVMKSLEDGYR
Intron Amino Acid Position:
830

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
69.5
35.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
68.4
0.42
1
61.8
39.8
Minor 5ss
36.3
-1.6
3.4
49.9
46.6
Minor BPS
62.8
0.48
1.8
80.66
41.5

Associated Gene:

Gene:
EPHA1
Ensembl Gene ID:
ENSAPLG00000002800
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002909
79880992 - 79914445
33454