Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79921861_79922211_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

79921861 - 79922211

Intron Length:

351

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGGGAC

5'SS Class:

strong_major

3'SS Sequence:

CCTCTTCCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTATAA

U12 Branch Point Sequence:

TTGGGATTGACA

Flanking Amino Acid:

TEQPAAVKDTHRPTGSSADP

Intron Amino Acid Position:

316

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

67.8

37.7

Major BPS

57.5

0.19

1.1

55.2

40.4

Major PPT

82.3

0.73

0.7

76.6

25.4

Minor 5ss

-2.3

3.5

41.5

45.4

Minor BPS

47.3

-0.2

2.2

63.13

43.4

Associated Gene:

Gene:

ZYX

Ensembl Gene ID:

ENSAPLG00000003801

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027632

79920214 - 79926985

6772

ENSAPLT00000003895

79919460 - 79926985

7526