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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79967688_79969133_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79967688 - 79969133
Intron Length:
1446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGGTTTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATTACACTAACT
Flanking Amino Acid:
GSSFHRPSTEQTRTDFSWDG
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
79.2
0.66
0.8
77.9
36.6
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
57.9
0.32
2
81.91
38.5

Associated Gene:

Gene:
FAM131B
Ensembl Gene ID:
ENSAPLG00000028789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026619
79967634 - 79976051
8418