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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79969170_79972730_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79969170 - 79972730
Intron Length:
3561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TATTTCTTCATA
Flanking Amino Acid:
RTDFSWDGINLSMEDTTSIL
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.9
34.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
89.8
0.9
0.6
88
21.8
Minor 5ss
36.3
-1.5
2.9
47
41.7
Minor BPS
65.3
0.47
1.7
75.8
35.8

Associated Gene:

Gene:
FAM131B
Ensembl Gene ID:
ENSAPLG00000028789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026619
79967634 - 79976051
8418