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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79974085_79974506_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79974085 - 79974506
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
CCGTGTCTAACT
Flanking Amino Acid:
ENYQELMESQEHMAQTQYDS
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
85.8
0.81
0.7
80.7
24.6
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
47.2
-0.1
2.1
63.53
47.1

Associated Gene:

Gene:
FAM131B
Ensembl Gene ID:
ENSAPLG00000028789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026619
79967634 - 79976051
8418