About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79991688_79992506_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79991688 - 79992506
Intron Length:
819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTCTCTGAACT
Flanking Amino Acid:
KLKGVLALEELQKAIEGSTR
Intron Amino Acid Position:
880

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
76.5
0.6
0.8
73.6
30
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
74.8
0.86
1.3
90.4
32.6

Associated Gene:

Gene:
CLCN1
Ensembl Gene ID:
ENSAPLG00000004009
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045237
79990342 - 80053707
63366
ENSAPLT00000044841
79990342 - 80053581
63240
ENSAPLT00000004156
79990342 - 80032871
42530
ENSAPLT00000046486
79990342 - 80032777
42436