About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79992594_79994732_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79992594 - 79994732
Intron Length:
2139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GGTTTCTAAAAT
Flanking Amino Acid:
QLVERTSLHKTHTLFSLLGL
Intron Amino Acid Position:
851

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.8
0.71
0.7
81.5
30.5
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
57.8
0.32
1.8
74.53
41.8

Associated Gene:

Gene:
CLCN1
Ensembl Gene ID:
ENSAPLG00000004009
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046486
79990342 - 80032777
42436
ENSAPLT00000045237
79990342 - 80053707
63366
ENSAPLT00000044841
79990342 - 80053581
63240
ENSAPLT00000004156
79990342 - 80032871
42530