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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79995520_79996242_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79995520 - 79996242
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGGGAT
5'SS Class:
major
3'SS Sequence:
TTTTCTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
CTATCCTGACCA
Flanking Amino Acid:
RPLERESDVQEPVEVIDTMT
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1.1
74.2
36.1
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
90
0.9
0.6
84.8
23.1
Minor 5ss
27.2
-2.6
3.4
38.1
46.9
Minor BPS
58
0.25
1.8
69.12
43

Associated Gene:

Gene:
CLCN1
Ensembl Gene ID:
ENSAPLG00000004009
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004156
79990342 - 80032871
42530
ENSAPLT00000046486
79990342 - 80032777
42436
ENSAPLT00000045237
79990342 - 80053707
63366
ENSAPLT00000044841
79990342 - 80053581
63240