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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79999100_79999791_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79999100 - 79999791
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTAG
5'SS Class:
major
3'SS Sequence:
CATAAATTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TAACTCTTAACT
Flanking Amino Acid:
YLPDLGWNHISKYNVFVEDI
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
61.6
39.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
66.1
0.36
1
57.6
41.6
Minor 5ss
41.5
-0.9
3.2
54.5
49.7
Minor BPS
75.8
0.89
1.2
83.69
36.3

Associated Gene:

Gene:
CLCN1
Ensembl Gene ID:
ENSAPLG00000004009
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044841
79990342 - 80053581
63240
ENSAPLT00000004156
79990342 - 80032871
42530
ENSAPLT00000046486
79990342 - 80032777
42436
ENSAPLT00000045237
79990342 - 80053707
63366